| TF name | Position | PWM scan score |
| UlaR | 351-370 | 19.839 |
| ArcA | 338-398 | 17.122 |
| Ada | 150-177 | 16.041 |
| AgaR | 348-371 | 14.656 |
| PspF | 296-312 | 10.404 |
| NagC | 362-384 | 9.883 |
| FNR | 366-387 | 9.880 |
| RcsB | 165-178 | 9.491 |
| MelR | 137-154 | 9.473 |
| IHF | 387-399 | 9.270 |
| CytR | 131-170 | 9.135 |
| MetR | 155-178 | 8.409 |
| H-NS | 32-46 | 8.388 |
| FruR | 146-163 | 8.066 |
| OmpR | 294-313 | 7.922 |
| Fis | 301-321 | 7.412 |
| CpxR | 154-168 | 7.259 |
| XylR | 164-181 | 7.253 |
| DcuR | 340-394 | 7.189 |
| DeoR | 213-228 | 6.893 |
| Lrp | 170-181 | 6.702 |
| TorR | 327-336 | 6.688 |
| ArgP | 260-272 | 6.424 |
| AraC | 159-176 | 6.415 |
| NarL | 52-58 | 6.267 |
| CRP | 363-384 | 6.243 |
| RhaS | 177-193 | 6.222 |
| Nac | 120-134 | 6.151 |
| MalT | 153-162 | 6.036 |
| GlpR | 167-186 | 5.872 |
| PurR | 229-244 | 5.626 |
| PhoP | 280-296 | 5.284 |
| DnaA | 357-365 | 5.233 |
| FadR | 128-144 | 5.151 |