| TF name | Position | PWM scan score |
| Ada | 67-94 | 14.766 |
| SoxS | 318-335 | 11.422 |
| FNR | 142-163 | 10.999 |
| AraC | 301-318 | 10.587 |
| Fis | 131-151 | 9.747 |
| Nac | 209-223 | 9.634 |
| TyrR | 124-145 | 9.430 |
| MarA | 316-336 | 8.823 |
| IHF | 142-154 | 8.478 |
| Fur | 237-251 | 8.400 |
| NarP | 334-340 | 8.308 |
| GntR | 137-156 | 8.279 |
| MalT | 19-28 | 8.046 |
| FadR | 303-319 | 7.982 |
| Lrp | 327-338 | 7.964 |
| GlpR | 153-172 | 7.900 |
| Rob | 154-174 | 7.564 |
| GadE | 129-148 | 7.500 |
| H-NS | 321-335 | 7.392 |
| NagC | 210-232 | 7.356 |
| ModE | 49-75 | 6.587 |
| OmpR | 78-97 | 6.098 |
| CRP | 130-151 | 6.022 |
| ArgR | 76-91 | 5.914 |
| DcuR | 216-270 | 5.791 |
| RcsB | 2-15 | 5.706 |
| CpxR | 241-255 | 5.466 |
| DnaA | 299-307 | 5.381 |
| FhlA | 306-345 | 5.297 |
| NorR | 359-375 | 5.233 |