| TF name | Position | PWM scan score |
| NagC | 117-139 | 10.574 |
| MelR | 259-276 | 9.705 |
| ArgR | 42-57 | 9.636 |
| DeoR | 321-336 | 9.178 |
| ArcA | 204-264 | 8.949 |
| NarP | 278-284 | 8.911 |
| RcsB | 380-393 | 8.648 |
| NarL | 241-247 | 8.326 |
| NorR | 171-187 | 8.163 |
| GntR | 48-67 | 7.731 |
| PhoB | 232-251 | 7.185 |
| H-NS | 135-149 | 7.137 |
| FadR | 137-153 | 7.108 |
| MetJ | 258-265 | 7.073 |
| FNR | 242-263 | 6.803 |
| Ada | 166-193 | 6.571 |
| MetR | 191-214 | 6.525 |
| OmpR | 220-239 | 6.443 |
| AraC | 215-232 | 6.239 |
| ArgP | 270-282 | 6.188 |
| TorR | 271-280 | 6.143 |
| OxyR | 228-272 | 6.093 |
| Lrp | 175-186 | 5.955 |
| CRP | 331-352 | 5.913 |
| IHF | 236-248 | 5.613 |
| Nac | 232-246 | 5.613 |
| Fis | 31-51 | 5.586 |
| IdnR | 31-46 | 5.469 |
| AgaR | 326-349 | 5.378 |
| SoxS | 296-313 | 5.352 |
| GadE | 223-242 | 5.198 |