| TF name | Position | PWM scan score |
| H-NS | 348-362 | 14.101 |
| TyrR | 63-84 | 13.903 |
| ArcA | 230-290 | 13.082 |
| Fur | 251-265 | 11.400 |
| Mlc | 334-356 | 11.159 |
| CysB | 255-296 | 10.405 |
| RcsB | 234-247 | 10.247 |
| IHF | 124-136 | 9.261 |
| RhaS | 200-216 | 9.152 |
| CRP | 332-353 | 9.090 |
| NorR | 127-143 | 9.059 |
| FhlA | 226-265 | 8.910 |
| GlpR | 133-152 | 8.599 |
| Nac | 229-243 | 8.595 |
| FNR | 263-284 | 8.004 |
| AgaR | 1-24 | 7.951 |
| ArgP | 287-299 | 7.883 |
| Fis | 349-369 | 7.788 |
| UlaR | 247-266 | 7.442 |
| OxyR | 253-297 | 7.249 |
| MalT | 174-183 | 7.123 |
| NarL | 253-259 | 6.854 |
| Lrp | 365-376 | 6.853 |
| TorR | 230-239 | 6.782 |
| MarA | 343-363 | 6.709 |
| NarP | 155-161 | 6.598 |
| ArgR | 346-361 | 6.482 |
| SoxS | 381-398 | 6.356 |
| DeoR | 356-371 | 6.232 |
| MetJ | 233-240 | 6.100 |
| MelR | 340-357 | 6.035 |
| NtrC | 327-343 | 5.485 |
| ModE | 56-82 | 5.447 |
| GcvA | 342-370 | 5.389 |
| CpxR | 330-344 | 5.353 |
| FadR | 161-177 | 5.346 |
| IdnR | 234-249 | 5.328 |
| GntR | 267-286 | 5.125 |
| PhoP | 339-355 | 5.098 |
| Rob | 352-372 | 5.037 |