| TF name | Position | PWM scan score |
| FruR | 375-392 | 11.571 |
| SoxS | 86-103 | 10.593 |
| AraC | 156-173 | 10.467 |
| Rob | 365-385 | 9.931 |
| DeoR | 331-346 | 9.741 |
| MarA | 337-357 | 9.493 |
| NorR | 94-110 | 9.469 |
| CueR | 214-232 | 8.848 |
| PurR | 166-181 | 8.502 |
| RcsB | 30-43 | 8.347 |
| IHF | 332-344 | 8.187 |
| NarL | 225-231 | 8.142 |
| ArgR | 158-173 | 7.945 |
| Ada | 149-176 | 7.660 |
| Nac | 1-15 | 7.414 |
| PhoB | 197-216 | 7.394 |
| XylR | 44-61 | 7.287 |
| FNR | 152-173 | 7.269 |
| TorR | 105-114 | 7.265 |
| MalT | 215-224 | 7.044 |
| Fis | 367-387 | 6.709 |
| CRP | 117-138 | 6.623 |
| MelR | 90-107 | 6.510 |
| LacI | 224-244 | 6.342 |
| MetJ | 9-16 | 6.337 |
| RhaS | 267-283 | 6.302 |
| ArgP | 331-343 | 6.116 |
| Lrp | 206-217 | 6.065 |
| GalR | 166-181 | 5.820 |
| GalS | 166-181 | 5.820 |
| NarP | 294-300 | 5.746 |
| GadE | 152-171 | 5.627 |
| H-NS | 35-49 | 5.491 |
| GlpR | 181-200 | 5.301 |
| OmpR | 323-342 | 5.199 |