| TF name | Position | PWM scan score |
| XylR | 210-227 | 14.188 |
| FNR | 76-97 | 10.329 |
| MetJ | 287-294 | 10.318 |
| AgaR | 354-377 | 10.188 |
| FadR | 323-339 | 10.047 |
| CytR | 68-107 | 9.935 |
| GntR | 161-180 | 9.697 |
| GadE | 374-393 | 9.474 |
| TorR | 327-336 | 8.649 |
| ArgR | 47-62 | 8.633 |
| DnaA | 285-293 | 8.332 |
| UlaR | 271-290 | 8.205 |
| NagC | 75-97 | 7.938 |
| MalT | 190-199 | 7.934 |
| Nac | 332-346 | 7.741 |
| Ada | 58-85 | 7.693 |
| Mlc | 294-316 | 7.450 |
| RcsB | 355-368 | 7.393 |
| Lrp | 198-209 | 7.366 |
| H-NS | 354-368 | 7.084 |
| ArgP | 84-96 | 7.055 |
| NorR | 213-229 | 7.050 |
| PhoB | 270-289 | 7.029 |
| NarL | 195-201 | 6.945 |
| MarA | 379-399 | 6.764 |
| Rob | 378-398 | 6.573 |
| CysB | 354-395 | 6.484 |
| Fis | 193-213 | 6.483 |
| SoxS | 258-275 | 6.355 |
| GalS | 341-356 | 6.323 |
| GalR | 341-356 | 6.323 |
| AraC | 287-304 | 6.085 |
| RhaS | 164-180 | 5.871 |
| DcuR | 274-328 | 5.863 |
| GcvA | 63-91 | 5.640 |
| CRP | 52-73 | 5.553 |
| IHF | 330-342 | 5.549 |
| Fur | 286-300 | 5.508 |
| ModE | 355-381 | 5.486 |
| PspF | 207-223 | 5.407 |