| TF name | Position | PWM scan score |
| GlpR | 170-189 | 10.969 |
| MarA | 167-187 | 10.439 |
| ModE | 353-379 | 10.391 |
| MalT | 232-241 | 9.169 |
| FNR | 171-192 | 9.078 |
| TorR | 11-20 | 8.594 |
| H-NS | 351-365 | 8.420 |
| RcsB | 118-131 | 8.419 |
| SoxS | 169-186 | 8.305 |
| UlaR | 352-371 | 8.265 |
| GntR | 166-185 | 8.150 |
| AgaR | 10-33 | 7.979 |
| ArgP | 176-188 | 7.974 |
| MetJ | 326-333 | 7.138 |
| Lrp | 14-25 | 6.970 |
| Fis | 91-111 | 6.861 |
| OmpR | 346-365 | 6.407 |
| FhlA | 232-271 | 6.367 |
| IHF | 18-30 | 6.135 |
| PhoB | 339-358 | 5.840 |
| FadR | 99-115 | 5.736 |
| Nac | 250-264 | 5.582 |
| RhaS | 193-209 | 5.560 |
| NarL | 253-259 | 5.551 |
| DnaA | 351-359 | 5.514 |
| Rob | 171-191 | 5.205 |