| TF name | Position | PWM scan score |
| ModE | 355-381 | 11.138 |
| MetJ | 342-349 | 10.318 |
| IHF | 378-390 | 9.313 |
| Rob | 155-175 | 9.032 |
| PhoB | 343-362 | 8.855 |
| TyrR | 238-259 | 8.813 |
| NarP | 378-384 | 8.118 |
| XylR | 216-233 | 7.773 |
| OmpR | 157-176 | 7.715 |
| H-NS | 351-365 | 7.639 |
| FruR | 375-392 | 7.614 |
| Fis | 341-361 | 7.600 |
| TorR | 139-148 | 7.492 |
| UlaR | 17-36 | 7.440 |
| Fur | 238-252 | 7.224 |
| RhaS | 260-276 | 7.083 |
| ArgP | 369-381 | 6.977 |
| FadR | 188-204 | 6.874 |
| IdnR | 6-21 | 6.866 |
| RcsB | 95-108 | 6.791 |
| UxuR | 371-388 | 6.775 |
| PhoP | 364-380 | 6.689 |
| ArcA | 61-121 | 6.645 |
| DnaA | 376-384 | 6.605 |
| FNR | 364-385 | 6.562 |
| Lrp | 25-36 | 6.371 |
| ArgR | 366-381 | 6.347 |
| CysB | 342-383 | 6.236 |
| LacI | 174-194 | 6.166 |
| NarL | 112-118 | 5.405 |
| CpxR | 32-46 | 5.382 |
| CytR | 347-386 | 5.375 |
| MelR | 281-298 | 5.214 |
| GadE | 370-389 | 5.190 |
| GalR | 302-317 | 5.150 |
| GalS | 302-317 | 5.150 |
| GlpR | 291-310 | 5.089 |