| TF name | Position | PWM scan score |
| Fis | 258-278 | 11.661 |
| FNR | 68-89 | 9.967 |
| H-NS | 365-379 | 9.449 |
| PurR | 101-116 | 9.145 |
| IHF | 325-337 | 9.059 |
| NorR | 338-354 | 8.435 |
| AraC | 277-294 | 8.417 |
| Lrp | 264-275 | 8.352 |
| RhaS | 233-249 | 8.164 |
| SoxS | 194-211 | 7.958 |
| TrpR | 33-50 | 7.805 |
| NagC | 251-273 | 7.738 |
| DeoR | 76-91 | 7.591 |
| GlpR | 367-386 | 7.528 |
| TorR | 312-321 | 7.492 |
| PhoP | 199-215 | 7.390 |
| GcvA | 259-287 | 7.363 |
| NtrC | 29-45 | 6.882 |
| MetJ | 290-297 | 6.452 |
| NarL | 189-195 | 6.388 |
| CueR | 84-102 | 6.090 |
| RcsB | 135-148 | 5.998 |
| LacI | 4-24 | 5.954 |
| DnaA | 148-156 | 5.954 |
| NarP | 319-325 | 5.602 |
| FruR | 118-135 | 5.502 |
| OmpR | 362-381 | 5.316 |
| Mlc | 250-272 | 5.228 |
| ArgP | 361-373 | 5.126 |