| TF name | Position | PWM scan score |
| AgaR | 37-60 | 15.050 |
| PhoP | 383-399 | 12.714 |
| H-NS | 376-390 | 11.838 |
| RcsB | 317-330 | 10.798 |
| AraC | 238-255 | 10.708 |
| GadE | 342-361 | 9.784 |
| FruR | 262-279 | 9.729 |
| FNR | 333-354 | 9.715 |
| GlpR | 338-357 | 8.411 |
| PurR | 224-239 | 8.328 |
| NarL | 63-69 | 8.169 |
| OmpR | 352-371 | 8.142 |
| IHF | 181-193 | 7.760 |
| DeoR | 342-357 | 7.718 |
| RhaS | 112-128 | 7.477 |
| CpxR | 44-58 | 7.172 |
| CRP | 330-351 | 7.136 |
| ArgP | 50-62 | 7.035 |
| TorR | 341-350 | 6.916 |
| Nac | 166-180 | 6.764 |
| TyrR | 336-357 | 6.542 |
| Rob | 376-396 | 6.475 |
| MarA | 96-116 | 5.906 |
| PhoB | 344-363 | 5.879 |
| GalS | 224-239 | 5.594 |
| GalR | 224-239 | 5.594 |
| Fis | 291-311 | 5.574 |
| DnaA | 340-348 | 5.524 |
| ArgR | 384-399 | 5.521 |
| NorR | 154-170 | 5.221 |
| UxuR | 157-174 | 5.141 |
| XylR | 171-188 | 5.112 |