| TF name | Position | PWM scan score |
| SoxS | 143-160 | 15.909 |
| H-NS | 375-389 | 12.572 |
| MetJ | 343-350 | 11.792 |
| RcsB | 165-178 | 11.415 |
| Nac | 127-141 | 11.371 |
| Mlc | 40-62 | 11.324 |
| LacI | 166-186 | 11.282 |
| DnaA | 270-278 | 11.261 |
| LexA | 264-283 | 11.235 |
| AgaR | 37-60 | 10.637 |
| OmpR | 135-154 | 10.224 |
| IdnR | 172-187 | 9.943 |
| TorR | 130-139 | 9.678 |
| PhoB | 28-47 | 9.614 |
| ArgP | 385-397 | 9.346 |
| NagC | 215-237 | 8.990 |
| CytR | 104-143 | 8.906 |
| CpxR | 154-168 | 8.558 |
| AraC | 82-99 | 8.549 |
| Lrp | 151-162 | 8.351 |
| MalT | 244-253 | 8.263 |
| FNR | 322-343 | 8.114 |
| IHF | 123-135 | 7.894 |
| CysB | 180-221 | 7.763 |
| PspF | 299-315 | 7.719 |
| Fur | 370-384 | 7.537 |
| PhoP | 333-349 | 7.469 |
| NarL | 181-187 | 7.283 |
| FruR | 145-162 | 6.924 |
| ArcA | 334-394 | 6.833 |
| TyrR | 123-144 | 6.621 |
| UxuR | 128-145 | 6.565 |
| GadE | 135-154 | 6.225 |
| NorR | 201-217 | 6.108 |
| ModE | 27-53 | 5.859 |
| DeoR | 374-389 | 5.806 |
| NarP | 376-382 | 5.765 |
| ArgR | 84-99 | 5.727 |
| GntR | 177-196 | 5.605 |
| Fis | 260-280 | 5.479 |
| XylR | 261-278 | 5.324 |