| TF name | Position | PWM scan score |
| FNR | 370-391 | 11.354 |
| RcsB | 76-89 | 9.900 |
| OmpR | 366-385 | 9.395 |
| H-NS | 378-392 | 9.035 |
| DeoR | 261-276 | 8.795 |
| MarA | 293-313 | 8.489 |
| NarP | 130-136 | 8.154 |
| MetJ | 196-203 | 8.120 |
| NarL | 290-296 | 8.006 |
| ArgP | 301-313 | 7.534 |
| GadE | 378-397 | 7.483 |
| Lrp | 296-307 | 7.133 |
| Rob | 168-188 | 6.793 |
| GlpR | 131-150 | 6.410 |
| UlaR | 164-183 | 6.345 |
| PhoP | 296-312 | 6.343 |
| PhoB | 82-101 | 6.211 |
| LacI | 183-203 | 6.203 |
| SoxS | 236-253 | 5.987 |
| CueR | 310-328 | 5.725 |
| Nac | 367-381 | 5.545 |
| IHF | 370-382 | 5.485 |
| Fur | 302-316 | 5.419 |
| AraC | 75-92 | 5.383 |
| Fis | 123-143 | 5.291 |
| AgaR | 159-182 | 5.260 |