| TF name | Position | PWM scan score |
| ArcA | 58-118 | 16.959 |
| CysB | 58-99 | 14.172 |
| Mlc | 75-97 | 13.609 |
| FNR | 79-100 | 11.802 |
| OmpR | 71-90 | 11.192 |
| SoxS | 55-72 | 10.291 |
| RcsB | 173-186 | 9.900 |
| AraC | 89-106 | 9.274 |
| CRP | 40-61 | 9.181 |
| XylR | 13-30 | 9.099 |
| ArgP | 60-72 | 8.997 |
| DeoR | 358-373 | 8.795 |
| UlaR | 65-84 | 8.586 |
| PhoB | 57-76 | 8.521 |
| Fis | 88-108 | 8.475 |
| IHF | 11-23 | 8.293 |
| NarP | 227-233 | 8.154 |
| MetJ | 293-300 | 8.120 |
| NorR | 4-20 | 8.072 |
| MarA | 47-67 | 8.036 |
| NarL | 387-393 | 8.006 |
| PspF | 10-26 | 7.943 |
| GadE | 36-55 | 7.665 |
| Lrp | 91-102 | 7.450 |
| MetR | 19-42 | 7.142 |
| H-NS | 95-109 | 6.962 |
| Rob | 265-285 | 6.793 |
| DnaA | 23-31 | 6.433 |
| GlpR | 228-247 | 6.410 |
| LacI | 280-300 | 6.203 |
| ModE | 89-115 | 5.954 |
| CytR | 73-112 | 5.834 |
| AgaR | 4-27 | 5.807 |
| CpxR | 25-39 | 5.780 |
| GalR | 44-59 | 5.766 |
| GalS | 44-59 | 5.766 |
| DcuR | 54-108 | 5.710 |
| Fur | 89-103 | 5.575 |
| TyrR | 87-108 | 5.289 |
| Nac | 81-95 | 5.158 |
| TorR | 78-87 | 5.125 |