| TF name | Position | PWM scan score |
| ArcA | 93-153 | 25.137 |
| CytR | 74-113 | 18.874 |
| Fur | 143-157 | 15.687 |
| OmpR | 113-132 | 15.057 |
| AgaR | 206-229 | 11.920 |
| CysB | 99-140 | 11.881 |
| ArgR | 135-150 | 11.572 |
| Nac | 258-272 | 11.006 |
| GadE | 137-156 | 10.482 |
| MetR | 285-308 | 10.365 |
| TorR | 152-161 | 10.066 |
| NorR | 218-234 | 9.776 |
| UlaR | 68-87 | 9.369 |
| AraC | 290-307 | 9.286 |
| IHF | 160-172 | 9.178 |
| FNR | 117-138 | 9.113 |
| TyrR | 89-110 | 8.965 |
| SoxS | 107-124 | 8.723 |
| Fis | 150-170 | 8.540 |
| CRP | 157-178 | 8.515 |
| H-NS | 94-108 | 8.502 |
| ArgP | 26-38 | 8.416 |
| PurR | 100-115 | 8.365 |
| Lrp | 308-319 | 8.125 |
| Ada | 201-228 | 8.095 |
| Rob | 117-137 | 7.892 |
| XylR | 89-106 | 7.808 |
| OxyR | 81-125 | 7.571 |
| IdnR | 215-230 | 7.486 |
| NagC | 52-74 | 7.132 |
| FadR | 173-189 | 7.002 |
| ModE | 104-130 | 6.989 |
| RcsB | 172-185 | 6.988 |
| PhoP | 70-86 | 6.822 |
| MarA | 105-125 | 6.715 |
| DnaA | 30-38 | 6.632 |
| NarL | 323-329 | 6.560 |
| NarP | 229-235 | 6.558 |
| GntR | 172-191 | 6.063 |
| Mlc | 79-101 | 5.856 |
| MalT | 331-340 | 5.814 |
| GcvA | 145-173 | 5.708 |
| UxuR | 24-41 | 5.555 |
| CpxR | 361-375 | 5.543 |
| PhoB | 83-102 | 5.535 |
| GalS | 100-115 | 5.356 |
| GalR | 100-115 | 5.356 |