| TF name | Position | PWM scan score |
| AgaR | 216-239 | 14.840 |
| H-NS | 384-398 | 13.676 |
| Nac | 209-223 | 13.587 |
| TorR | 210-219 | 13.206 |
| IHF | 325-337 | 10.446 |
| AraC | 255-272 | 9.285 |
| Fur | 14-28 | 9.129 |
| LacI | 358-378 | 9.019 |
| MetJ | 145-152 | 8.428 |
| MalT | 162-171 | 8.344 |
| TyrR | 211-232 | 7.728 |
| IdnR | 46-61 | 7.102 |
| NorR | 67-83 | 7.050 |
| SoxS | 343-360 | 6.734 |
| Lrp | 151-162 | 6.623 |
| Fis | 248-268 | 6.558 |
| ArgP | 358-370 | 6.511 |
| UxuR | 20-37 | 6.391 |
| NarL | 257-263 | 6.294 |
| DnaA | 336-344 | 6.219 |
| MarA | 376-396 | 6.006 |
| UlaR | 214-233 | 5.928 |
| RhaS | 125-141 | 5.928 |
| FNR | 152-173 | 5.727 |
| PurR | 258-273 | 5.720 |
| XylR | 353-370 | 5.688 |
| CRP | 149-170 | 5.654 |
| FruR | 162-179 | 5.645 |
| PhoP | 343-359 | 5.302 |