| TF name | Position | PWM scan score |
| GadE | 290-309 | 15.442 |
| CytR | 123-162 | 12.248 |
| PhoB | 257-276 | 12.136 |
| AraC | 307-324 | 11.623 |
| IHF | 303-315 | 11.600 |
| Fis | 130-150 | 10.792 |
| ArcA | 261-321 | 10.750 |
| H-NS | 267-281 | 10.702 |
| FNR | 148-169 | 10.546 |
| OxyR | 127-171 | 10.545 |
| Lrp | 297-308 | 9.584 |
| SoxS | 345-362 | 9.331 |
| PhoP | 131-147 | 9.300 |
| OmpR | 255-274 | 9.294 |
| NagC | 211-233 | 8.908 |
| GntR | 205-224 | 8.873 |
| CRP | 320-341 | 8.470 |
| ArgR | 265-280 | 8.374 |
| CpxR | 244-258 | 8.373 |
| NarL | 132-138 | 8.190 |
| RcsB | 265-278 | 8.065 |
| ArgP | 8-20 | 7.974 |
| PurR | 157-172 | 7.921 |
| TorR | 9-18 | 7.372 |
| MarA | 123-143 | 7.036 |
| TyrR | 214-235 | 6.908 |
| Ada | 36-63 | 6.627 |
| ModE | 258-284 | 6.509 |
| FruR | 122-139 | 6.213 |
| Rob | 124-144 | 6.074 |
| RhaS | 26-42 | 5.657 |
| Mlc | 241-263 | 5.623 |
| Nac | 299-313 | 5.609 |
| DeoR | 324-339 | 5.594 |
| DnaA | 8-16 | 5.514 |
| AgaR | 299-322 | 5.493 |
| XylR | 220-237 | 5.441 |
| Fur | 201-215 | 5.285 |
| NarP | 366-372 | 5.094 |