| TF name | Position | PWM scan score |
| XylR | 128-145 | 9.758 |
| MalT | 290-299 | 9.614 |
| PhoP | 382-398 | 7.365 |
| MetJ | 48-55 | 7.217 |
| AgaR | 289-312 | 6.987 |
| DeoR | 254-269 | 6.476 |
| NtrC | 60-76 | 6.416 |
| MelR | 87-104 | 6.290 |
| NarL | 162-168 | 6.169 |
| CRP | 350-371 | 6.094 |
| RhaS | 326-342 | 5.918 |
| NarP | 100-106 | 5.073 |