| TF name | Position | PWM scan score |
| ModE | 302-328 | 11.545 |
| FadR | 92-108 | 10.801 |
| H-NS | 268-282 | 9.978 |
| Lrp | 309-320 | 8.872 |
| SoxS | 210-227 | 8.675 |
| MelR | 310-327 | 8.606 |
| GalR | 320-335 | 8.315 |
| GalS | 320-335 | 8.315 |
| CueR | 206-224 | 8.095 |
| IHF | 345-357 | 7.657 |
| MetJ | 157-164 | 7.644 |
| DeoR | 24-39 | 7.422 |
| GlpR | 324-343 | 7.132 |
| NarP | 77-83 | 7.127 |
| CRP | 270-291 | 7.015 |
| Fis | 302-322 | 6.790 |
| MalT | 121-130 | 6.735 |
| OmpR | 300-319 | 6.693 |
| PhoP | 309-325 | 6.580 |
| RhaS | 334-350 | 6.344 |
| CpxR | 265-279 | 6.340 |
| GadE | 302-321 | 6.164 |
| NarL | 367-373 | 5.802 |
| LacI | 267-287 | 5.768 |
| FNR | 325-346 | 5.549 |
| TorR | 154-163 | 5.538 |
| DnaA | 332-340 | 5.415 |
| RcsB | 310-323 | 5.094 |