| TF name | Position | PWM scan score |
| Rob | 60-80 | 12.270 |
| RcsB | 14-27 | 10.247 |
| DeoR | 12-27 | 9.647 |
| TorR | 239-248 | 8.955 |
| DnaA | 87-95 | 8.868 |
| NorR | 62-78 | 8.526 |
| PhoB | 91-110 | 7.972 |
| CRP | 228-249 | 7.878 |
| MetJ | 97-104 | 6.995 |
| FadR | 149-165 | 6.936 |
| OmpR | 299-318 | 6.922 |
| ArgP | 99-111 | 6.866 |
| MalT | 374-383 | 6.847 |
| CueR | 259-277 | 6.801 |
| Fis | 86-106 | 6.801 |
| AraC | 89-106 | 6.265 |
| PhoP | 150-166 | 5.676 |
| AgaR | 322-345 | 5.644 |
| NarL | 330-336 | 5.595 |
| Lrp | 162-173 | 5.478 |
| ArgR | 12-27 | 5.338 |