| TF name | Position | PWM scan score |
| Rob | 205-225 | 12.270 |
| RcsB | 159-172 | 10.247 |
| DeoR | 157-172 | 9.647 |
| TorR | 384-393 | 8.955 |
| DnaA | 232-240 | 8.868 |
| NorR | 207-223 | 8.526 |
| PhoB | 236-255 | 7.972 |
| CRP | 373-394 | 7.878 |
| FadR | 20-36 | 7.223 |
| MetJ | 242-249 | 6.995 |
| ArgP | 244-256 | 6.866 |
| Fis | 231-251 | 6.801 |
| AraC | 234-251 | 6.265 |
| PhoP | 295-311 | 5.676 |
| Lrp | 307-318 | 5.478 |
| ArgR | 157-172 | 5.338 |
| Nac | 99-113 | 5.204 |
| MelR | 47-64 | 5.057 |