| TF name | Position | PWM scan score |
| ArcA | 112-172 | 13.807 |
| IHF | 64-76 | 12.918 |
| PhoP | 275-291 | 11.579 |
| FruR | 350-367 | 10.206 |
| PspF | 114-130 | 10.077 |
| CysB | 122-163 | 9.344 |
| OmpR | 38-57 | 9.287 |
| TyrR | 98-119 | 9.268 |
| FNR | 234-255 | 9.243 |
| MarA | 49-69 | 9.108 |
| DeoR | 332-347 | 8.688 |
| Nac | 215-229 | 8.635 |
| Lrp | 78-89 | 8.160 |
| FadR | 365-381 | 8.097 |
| CRP | 261-282 | 7.778 |
| NarL | 51-57 | 7.740 |
| MetJ | 379-386 | 7.732 |
| RcsB | 320-333 | 7.525 |
| TorR | 107-116 | 7.521 |
| H-NS | 116-130 | 7.359 |
| GadE | 329-348 | 7.318 |
| Ada | 133-160 | 7.251 |
| AgaR | 148-171 | 7.191 |
| ArgP | 224-236 | 7.037 |
| IdnR | 32-47 | 6.945 |
| GcvA | 284-312 | 6.743 |
| Rob | 133-153 | 6.624 |
| NagC | 329-351 | 6.540 |
| DnaA | 44-52 | 6.434 |
| GlpR | 54-73 | 6.317 |
| GntR | 226-245 | 6.269 |
| Fis | 73-93 | 6.161 |
| MalT | 192-201 | 6.136 |
| GalS | 122-137 | 6.128 |
| GalR | 122-137 | 6.128 |
| MetR | 86-109 | 5.972 |
| Fur | 136-150 | 5.939 |
| SoxS | 27-44 | 5.930 |
| CpxR | 110-124 | 5.889 |
| AraC | 142-159 | 5.824 |
| NtrC | 157-173 | 5.600 |
| RhaS | 154-170 | 5.523 |
| NorR | 177-193 | 5.494 |
| NarP | 392-398 | 5.412 |