| TF name | Position | PWM scan score |
| MarA | 324-344 | 9.251 |
| MelR | 251-268 | 8.331 |
| XylR | 336-353 | 7.916 |
| H-NS | 196-210 | 7.606 |
| SoxS | 326-343 | 7.512 |
| MetR | 136-159 | 7.312 |
| UlaR | 276-295 | 7.191 |
| NtrC | 90-106 | 7.040 |
| GadE | 378-397 | 7.003 |
| MalT | 357-366 | 6.933 |
| FNR | 135-156 | 6.865 |
| TorR | 233-242 | 6.672 |
| NorR | 47-63 | 6.108 |
| LacI | 341-361 | 6.025 |
| CRP | 132-153 | 6.015 |
| Lrp | 114-125 | 5.867 |
| AraC | 201-218 | 5.752 |
| NarL | 62-68 | 5.661 |
| ArgP | 133-145 | 5.603 |
| Ada | 340-367 | 5.480 |
| LexA | 61-80 | 5.367 |
| NagC | 120-142 | 5.336 |