| TF name | Position | PWM scan score |
| PhoB | 334-353 | 10.069 |
| NarP | 122-128 | 9.938 |
| OxyR | 294-338 | 9.414 |
| DeoR | 362-377 | 9.006 |
| NarL | 193-199 | 8.619 |
| CRP | 50-71 | 7.969 |
| FNR | 320-341 | 7.962 |
| Fur | 229-243 | 7.886 |
| H-NS | 364-378 | 7.686 |
| UxuR | 290-307 | 7.457 |
| MarA | 256-276 | 7.411 |
| PspF | 355-371 | 7.182 |
| AraC | 171-188 | 7.139 |
| GntR | 146-165 | 7.122 |
| OmpR | 353-372 | 7.050 |
| Lrp | 24-35 | 6.832 |
| CpxR | 286-300 | 6.663 |
| IHF | 334-346 | 6.398 |
| DnaA | 303-311 | 6.340 |
| MetR | 327-350 | 6.252 |
| XylR | 342-359 | 6.096 |
| UlaR | 332-351 | 6.068 |
| MelR | 59-76 | 5.909 |
| MalT | 151-160 | 5.823 |
| RhaS | 302-318 | 5.579 |
| TorR | 301-310 | 5.493 |
| Fis | 255-275 | 5.398 |
| GlpR | 366-385 | 5.392 |
| AgaR | 313-336 | 5.303 |
| Mlc | 345-367 | 5.301 |
| PhoP | 295-311 | 5.248 |