| TF name | Position | PWM scan score |
| Nac | 222-236 | 14.115 |
| TorR | 382-391 | 10.913 |
| IHF | 374-386 | 10.715 |
| NarP | 280-286 | 10.661 |
| Fis | 230-250 | 9.896 |
| MalT | 19-28 | 9.755 |
| XylR | 108-125 | 9.611 |
| NagC | 120-142 | 9.257 |
| RhaS | 358-374 | 9.179 |
| ModE | 337-363 | 9.143 |
| Rob | 349-369 | 8.833 |
| FhlA | 304-343 | 8.142 |
| FNR | 224-245 | 7.460 |
| DnaA | 388-396 | 7.330 |
| PurR | 359-374 | 7.271 |
| FruR | 92-109 | 7.160 |
| NorR | 240-256 | 7.095 |
| H-NS | 237-251 | 6.875 |
| IdnR | 128-143 | 6.854 |
| Lrp | 132-143 | 6.072 |
| GadE | 225-244 | 6.024 |
| GlpR | 379-398 | 5.914 |
| UlaR | 353-372 | 5.888 |
| RcsB | 371-384 | 5.880 |
| NarL | 275-281 | 5.876 |
| DeoR | 340-355 | 5.837 |
| AraC | 106-123 | 5.596 |
| SoxS | 129-146 | 5.048 |
| CRP | 365-386 | 5.028 |