| TF name | Position | PWM scan score |
| NorR | 57-73 | 11.421 |
| CueR | 249-267 | 10.544 |
| ModE | 47-73 | 10.449 |
| MarA | 182-202 | 10.423 |
| H-NS | 141-155 | 9.420 |
| NagC | 270-292 | 8.764 |
| NarL | 153-159 | 8.619 |
| SoxS | 41-58 | 8.147 |
| PhoB | 96-115 | 7.637 |
| Lrp | 385-396 | 7.433 |
| XylR | 54-71 | 7.411 |
| NarP | 128-134 | 7.302 |
| ArgP | 66-78 | 7.254 |
| CRP | 181-202 | 7.138 |
| TorR | 243-252 | 6.782 |
| TyrR | 54-75 | 6.695 |
| AraC | 300-317 | 6.472 |
| FNR | 184-205 | 6.368 |
| NtrC | 303-319 | 6.287 |
| OmpR | 180-199 | 6.228 |
| GlpR | 339-358 | 5.871 |
| ArcA | 127-187 | 5.804 |
| GntR | 212-231 | 5.743 |
| GalS | 108-123 | 5.632 |
| GalR | 108-123 | 5.632 |
| IHF | 19-31 | 5.627 |
| GadE | 187-206 | 5.430 |
| Fis | 113-133 | 5.333 |
| DeoR | 376-391 | 5.215 |
| IdnR | 40-55 | 5.112 |
| Rob | 278-298 | 5.047 |