| TF name | Position | PWM scan score |
| MelR | 289-306 | 14.435 |
| FadR | 4-20 | 13.088 |
| DnaA | 171-179 | 9.952 |
| NarP | 183-189 | 9.705 |
| TorR | 346-355 | 9.594 |
| NarL | 87-93 | 8.782 |
| GlpR | 237-256 | 8.569 |
| NorR | 211-227 | 8.447 |
| IHF | 172-184 | 8.233 |
| RcsB | 270-283 | 7.951 |
| Ada | 56-83 | 7.081 |
| FNR | 166-187 | 6.954 |
| PhoP | 288-304 | 6.741 |
| Lrp | 71-82 | 6.395 |
| Fis | 266-286 | 6.071 |
| MalT | 156-165 | 5.816 |
| Nac | 144-158 | 5.582 |
| MarA | 93-113 | 5.544 |
| ArgP | 301-313 | 5.512 |
| PurR | 267-282 | 5.392 |
| RhaS | 8-24 | 5.290 |
| GntR | 269-288 | 5.203 |