| TF name | Position | PWM scan score |
| OmpR | 235-254 | 9.966 |
| GlpR | 130-149 | 9.604 |
| Fis | 357-377 | 9.388 |
| FruR | 126-143 | 9.242 |
| RcsB | 189-202 | 9.091 |
| RhaS | 157-173 | 9.061 |
| Lrp | 191-202 | 8.663 |
| Rob | 45-65 | 8.270 |
| PhoB | 233-252 | 8.208 |
| Ada | 259-286 | 7.821 |
| ArcA | 318-378 | 7.655 |
| GadE | 236-255 | 7.623 |
| NtrC | 271-287 | 7.604 |
| FNR | 306-327 | 7.384 |
| IHF | 5-17 | 7.297 |
| MetJ | 331-338 | 7.198 |
| ArgP | 344-356 | 6.944 |
| AraC | 340-357 | 6.934 |
| Nac | 356-370 | 6.733 |
| UxuR | 357-374 | 6.621 |
| NarL | 188-194 | 6.516 |
| CytR | 334-373 | 6.236 |
| SoxS | 31-48 | 5.950 |
| DnaA | 258-266 | 5.767 |
| PspF | 144-160 | 5.706 |
| NarP | 183-189 | 5.094 |
| MalT | 172-181 | 5.028 |