| TF name | Position | PWM scan score |
| TorR | 176-185 | 13.513 |
| GcvA | 247-275 | 12.805 |
| CysB | 227-268 | 12.277 |
| ArcA | 208-268 | 11.875 |
| CytR | 171-210 | 11.299 |
| RcsB | 148-161 | 11.240 |
| TyrR | 229-250 | 10.678 |
| CRP | 86-107 | 10.633 |
| ArgP | 200-212 | 10.351 |
| AraC | 358-375 | 9.434 |
| IHF | 226-238 | 9.278 |
| Nac | 218-232 | 9.221 |
| AgaR | 170-193 | 9.090 |
| FhlA | 23-62 | 9.044 |
| GalS | 316-331 | 8.986 |
| GalR | 316-331 | 8.986 |
| ModE | 222-248 | 8.983 |
| DnaA | 356-364 | 8.889 |
| Fis | 194-214 | 8.719 |
| XylR | 295-312 | 8.698 |
| OmpR | 218-237 | 8.645 |
| MetJ | 223-230 | 8.120 |
| DcuR | 188-242 | 7.962 |
| Lrp | 229-240 | 7.627 |
| GlpR | 323-342 | 7.445 |
| FNR | 198-219 | 7.379 |
| RhaS | 305-321 | 7.274 |
| Rob | 97-117 | 7.233 |
| NagC | 213-235 | 7.200 |
| Fur | 202-216 | 7.144 |
| PurR | 81-96 | 7.033 |
| NorR | 167-183 | 6.653 |
| NarL | 203-209 | 6.651 |
| MelR | 230-247 | 6.589 |
| H-NS | 256-270 | 6.484 |
| PhoB | 220-239 | 6.356 |
| PhoP | 216-232 | 6.121 |
| MarA | 334-354 | 6.030 |
| GntR | 318-337 | 5.958 |
| FruR | 293-310 | 5.876 |
| SoxS | 308-325 | 5.771 |
| NarP | 308-314 | 5.746 |