| TF name | Position | PWM scan score |
| GcvA | 167-195 | 19.393 |
| GadE | 143-162 | 18.351 |
| ArcA | 146-206 | 18.287 |
| OmpR | 143-162 | 15.277 |
| FNR | 171-192 | 13.039 |
| Fis | 63-83 | 12.864 |
| XylR | 317-334 | 11.364 |
| IHF | 150-162 | 10.991 |
| CytR | 170-209 | 10.905 |
| UxuR | 144-161 | 10.399 |
| PhoB | 135-154 | 10.370 |
| NagC | 171-193 | 10.338 |
| AraC | 219-236 | 10.333 |
| H-NS | 142-156 | 10.288 |
| CysB | 131-172 | 9.978 |
| PhoP | 80-96 | 9.767 |
| ArgP | 105-117 | 9.725 |
| RcsB | 320-333 | 9.724 |
| Nac | 169-183 | 9.614 |
| TorR | 164-173 | 9.471 |
| FruR | 90-107 | 9.237 |
| DnaA | 377-385 | 9.181 |
| GntR | 54-73 | 9.074 |
| SoxS | 253-270 | 8.972 |
| MetJ | 338-345 | 8.875 |
| NorR | 355-371 | 8.617 |
| Rob | 105-125 | 8.271 |
| CRP | 136-157 | 8.106 |
| ModE | 128-154 | 8.089 |
| UlaR | 338-357 | 8.038 |
| ArgR | 319-334 | 7.975 |
| TyrR | 165-186 | 7.908 |
| Lrp | 140-151 | 7.885 |
| MalT | 84-93 | 7.469 |
| CaiF | 5-49 | 7.424 |
| DcuR | 324-378 | 7.322 |
| DeoR | 219-234 | 6.862 |
| AgaR | 153-176 | 6.671 |
| Mlc | 325-347 | 6.554 |
| PurR | 275-290 | 6.299 |
| Ada | 305-332 | 6.221 |
| GlpR | 53-72 | 6.174 |
| LacI | 57-77 | 5.658 |
| CpxR | 320-334 | 5.649 |
| NarL | 100-106 | 5.595 |
| IdnR | 99-114 | 5.560 |
| FadR | 57-73 | 5.290 |
| PspF | 173-189 | 5.131 |
| MetR | 270-293 | 5.006 |