| TF name | Position | PWM scan score |
| FruR | 337-354 | 12.709 |
| GadE | 241-260 | 11.426 |
| OmpR | 322-341 | 10.676 |
| PhoB | 323-342 | 9.776 |
| GntR | 91-110 | 9.728 |
| TorR | 131-140 | 9.422 |
| ArgR | 350-365 | 8.610 |
| ArcA | 204-264 | 8.476 |
| Nac | 322-336 | 8.456 |
| FadR | 127-143 | 8.416 |
| CueR | 315-333 | 8.087 |
| ArgP | 305-317 | 7.883 |
| MarA | 114-134 | 7.816 |
| XylR | 270-287 | 7.565 |
| DeoR | 328-343 | 7.309 |
| NarL | 219-225 | 7.309 |
| MalT | 204-213 | 7.288 |
| H-NS | 321-335 | 6.977 |
| GlpR | 231-250 | 6.447 |
| ModE | 41-67 | 6.446 |
| FNR | 213-234 | 6.223 |
| Fis | 231-251 | 6.200 |
| Lrp | 350-361 | 6.170 |
| AgaR | 304-327 | 6.093 |
| PhoP | 236-252 | 6.086 |
| UlaR | 203-222 | 5.888 |
| AraC | 198-215 | 5.691 |
| IHF | 241-253 | 5.647 |
| MetR | 361-384 | 5.608 |
| RhaS | 357-373 | 5.461 |
| NagC | 374-396 | 5.445 |
| GalS | 288-303 | 5.202 |
| GalR | 288-303 | 5.202 |
| CRP | 153-174 | 5.143 |
| TyrR | 271-292 | 5.115 |
| NarP | 29-35 | 5.094 |