| TF name | Position | PWM scan score |
| MetR | 131-154 | 11.949 |
| FNR | 249-270 | 11.762 |
| ArgP | 341-353 | 11.621 |
| XylR | 339-356 | 10.755 |
| NarP | 60-66 | 10.661 |
| UlaR | 151-170 | 9.530 |
| H-NS | 221-235 | 9.397 |
| AgaR | 148-171 | 8.972 |
| OxyR | 314-358 | 8.661 |
| SoxS | 204-221 | 8.476 |
| GadE | 375-394 | 8.257 |
| TorR | 248-257 | 8.166 |
| NorR | 261-277 | 7.765 |
| CpxR | 80-94 | 7.385 |
| Lrp | 263-274 | 7.010 |
| NarL | 55-61 | 6.918 |
| Fis | 256-276 | 6.745 |
| TyrR | 322-343 | 6.715 |
| MelR | 236-253 | 6.610 |
| GalR | 30-45 | 6.479 |
| GalS | 30-45 | 6.479 |
| ArcA | 305-365 | 6.304 |
| IdnR | 321-336 | 6.267 |
| PhoB | 254-273 | 6.235 |
| IHF | 155-167 | 6.133 |
| Nac | 209-223 | 6.038 |
| NagC | 330-352 | 5.981 |
| PhoP | 370-386 | 5.617 |
| CysB | 327-368 | 5.617 |
| MalT | 159-168 | 5.603 |
| ArgR | 259-274 | 5.543 |
| UxuR | 166-183 | 5.543 |
| GlpR | 201-220 | 5.516 |
| FadR | 258-274 | 5.490 |
| CRP | 82-103 | 5.465 |
| Rob | 259-279 | 5.048 |