| TF name | Position | PWM scan score |
| GalS | 21-36 | 11.227 |
| GalR | 21-36 | 11.227 |
| CRP | 258-279 | 9.641 |
| Lrp | 134-145 | 9.188 |
| MalT | 100-109 | 8.485 |
| FNR | 212-233 | 8.419 |
| XylR | 83-100 | 8.226 |
| SoxS | 242-259 | 7.714 |
| ArgR | 252-267 | 7.604 |
| MetR | 79-102 | 7.513 |
| H-NS | 256-270 | 7.473 |
| DnaA | 112-120 | 7.424 |
| TorR | 282-291 | 7.088 |
| DeoR | 29-44 | 7.032 |
| PhoB | 279-298 | 6.888 |
| PurR | 311-326 | 6.800 |
| ModE | 266-292 | 6.761 |
| GlpR | 25-44 | 6.584 |
| Nac | 352-366 | 6.427 |
| IHF | 110-122 | 6.347 |
| RcsB | 88-101 | 6.333 |
| Fis | 246-266 | 6.287 |
| UxuR | 283-300 | 6.208 |
| NorR | 112-128 | 6.199 |
| OmpR | 243-262 | 6.187 |
| MarA | 18-38 | 6.042 |
| AraC | 29-46 | 5.998 |
| NarL | 355-361 | 5.661 |
| UlaR | 116-135 | 5.217 |
| ArgP | 282-294 | 5.126 |