| TF name | Position | PWM scan score |
| GlpR | 19-38 | 14.207 |
| ArgR | 173-188 | 13.099 |
| TyrR | 11-32 | 11.650 |
| MetJ | 296-303 | 10.479 |
| DeoR | 23-38 | 9.535 |
| NarL | 286-292 | 8.782 |
| CueR | 57-75 | 8.769 |
| UlaR | 345-364 | 8.768 |
| CRP | 21-42 | 8.716 |
| H-NS | 177-191 | 8.167 |
| PhoB | 177-196 | 8.059 |
| GadE | 29-48 | 8.020 |
| FNR | 372-393 | 7.782 |
| GcvA | 251-279 | 7.704 |
| AraC | 9-26 | 7.552 |
| OmpR | 133-152 | 7.253 |
| NarP | 389-395 | 7.162 |
| ArgP | 47-59 | 7.122 |
| Lrp | 142-153 | 6.897 |
| IHF | 38-50 | 6.834 |
| NagC | 21-43 | 6.754 |
| SoxS | 141-158 | 6.715 |
| Rob | 33-53 | 6.614 |
| Fis | 170-190 | 6.558 |
| XylR | 45-62 | 6.497 |
| TorR | 180-189 | 6.473 |
| RcsB | 140-153 | 6.420 |
| FadR | 321-337 | 6.098 |
| GntR | 309-328 | 6.042 |
| MarA | 130-150 | 5.750 |
| AgaR | 369-392 | 5.727 |
| DnaA | 179-187 | 5.696 |
| PhoP | 289-305 | 5.346 |