| TF name | Position | PWM scan score |
| GcvA | 370-398 | 12.341 |
| FNR | 194-215 | 12.324 |
| MarA | 214-234 | 11.469 |
| NtrC | 15-31 | 11.076 |
| PhoP | 372-388 | 10.859 |
| NagC | 121-143 | 10.796 |
| MelR | 355-372 | 10.754 |
| MetJ | 131-138 | 10.318 |
| IHF | 365-377 | 10.016 |
| Fis | 257-277 | 9.736 |
| ArgR | 74-89 | 9.437 |
| XylR | 336-353 | 8.906 |
| OmpR | 373-392 | 8.715 |
| GntR | 326-345 | 8.076 |
| PhoB | 358-377 | 8.037 |
| Rob | 73-93 | 8.031 |
| H-NS | 376-390 | 7.680 |
| Lrp | 119-130 | 7.460 |
| AraC | 260-277 | 7.124 |
| TorR | 81-90 | 7.073 |
| NorR | 154-170 | 7.062 |
| CRP | 328-349 | 7.037 |
| IdnR | 201-216 | 7.032 |
| DnaA | 258-266 | 6.835 |
| NarP | 47-53 | 6.598 |
| SoxS | 196-213 | 6.539 |
| LacI | 209-229 | 6.289 |
| ArcA | 242-302 | 6.282 |
| NarL | 66-72 | 6.169 |
| Fur | 245-259 | 6.080 |
| Nac | 122-136 | 5.750 |
| CysB | 55-96 | 5.685 |
| FruR | 296-313 | 5.656 |
| RhaS | 332-348 | 5.492 |
| RcsB | 264-277 | 5.432 |
| GadE | 196-215 | 5.362 |
| CytR | 340-379 | 5.249 |
| MetR | 174-197 | 5.004 |