| TF name | Position | PWM scan score |
| ModE | 279-305 | 14.348 |
| GlpR | 336-355 | 13.434 |
| MarA | 41-61 | 13.162 |
| CRP | 336-357 | 11.914 |
| ArcA | 338-398 | 10.770 |
| OmpR | 371-390 | 10.571 |
| TyrR | 193-214 | 10.258 |
| AraC | 83-100 | 10.130 |
| IHF | 185-197 | 9.870 |
| GadE | 290-309 | 9.762 |
| DcuR | 344-398 | 9.694 |
| AgaR | 353-376 | 9.599 |
| PspF | 354-370 | 9.320 |
| PhoB | 290-309 | 8.916 |
| NtrC | 322-338 | 8.886 |
| Lrp | 379-390 | 8.657 |
| CpxR | 195-209 | 8.594 |
| GntR | 18-37 | 8.520 |
| H-NS | 94-108 | 8.194 |
| Ada | 182-209 | 8.178 |
| PhoP | 49-65 | 8.154 |
| NarL | 139-145 | 8.006 |
| RcsB | 361-374 | 7.517 |
| FNR | 339-360 | 7.468 |
| UlaR | 75-94 | 7.302 |
| MetJ | 83-90 | 7.073 |
| TorR | 305-314 | 7.050 |
| DnaA | 277-285 | 6.741 |
| Fis | 376-396 | 6.631 |
| Rob | 278-298 | 6.527 |
| Nac | 93-107 | 6.491 |
| SoxS | 370-387 | 6.397 |
| IdnR | 329-344 | 6.325 |
| Fur | 385-399 | 6.276 |
| MetR | 324-347 | 6.032 |
| CysB | 346-387 | 5.992 |
| UxuR | 190-207 | 5.953 |
| NagC | 373-395 | 5.920 |
| NarP | 134-140 | 5.552 |
| NorR | 241-257 | 5.482 |
| GcvA | 192-220 | 5.449 |
| LacI | 199-219 | 5.351 |
| CytR | 337-376 | 5.316 |