| TF name | Position | PWM scan score |
| Nac | 86-100 | 11.089 |
| MarA | 108-128 | 9.917 |
| AraC | 82-99 | 8.309 |
| IHF | 78-90 | 8.288 |
| UxuR | 236-253 | 7.417 |
| CRP | 55-76 | 7.342 |
| GadE | 88-107 | 7.141 |
| NorR | 160-176 | 7.083 |
| IdnR | 270-285 | 6.733 |
| DnaA | 242-250 | 6.605 |
| NarL | 366-372 | 6.428 |
| Rob | 191-211 | 6.412 |
| AgaR | 235-258 | 6.342 |
| LacI | 204-224 | 6.257 |
| UlaR | 346-365 | 6.245 |
| FadR | 19-35 | 6.152 |
| Lrp | 281-292 | 6.147 |
| Fis | 68-88 | 6.097 |
| DeoR | 111-126 | 6.090 |
| MalT | 45-54 | 6.001 |
| FruR | 323-340 | 5.874 |
| NarP | 335-341 | 5.672 |
| MetJ | 252-259 | 5.671 |
| H-NS | 141-155 | 5.667 |
| FNR | 95-116 | 5.560 |
| TorR | 141-150 | 5.538 |
| RcsB | 159-172 | 5.513 |
| ArgR | 196-211 | 5.503 |
| PhoP | 282-298 | 5.469 |
| OmpR | 203-222 | 5.333 |
| ModE | 334-360 | 5.166 |
| PhoB | 376-395 | 5.138 |
| SoxS | 114-131 | 5.118 |
| XylR | 233-250 | 5.112 |
| PurR | 82-97 | 5.096 |