| TF name | Position | PWM scan score |
| NtrC | 190-206 | 12.065 |
| MarA | 217-237 | 10.531 |
| H-NS | 140-154 | 10.330 |
| GlpR | 142-161 | 10.268 |
| ArgP | 23-35 | 9.352 |
| NarL | 94-100 | 8.782 |
| GalS | 179-194 | 8.474 |
| GalR | 179-194 | 8.474 |
| PhoB | 82-101 | 8.098 |
| IHF | 24-36 | 7.906 |
| OmpR | 69-88 | 7.839 |
| AgaR | 53-76 | 7.252 |
| Rob | 16-36 | 7.078 |
| Nac | 324-338 | 7.075 |
| Fis | 133-153 | 7.030 |
| AraC | 84-101 | 6.599 |
| FNR | 56-77 | 6.558 |
| RcsB | 19-32 | 6.391 |
| MalT | 33-42 | 6.351 |
| CRP | 284-305 | 6.331 |
| SoxS | 228-245 | 6.194 |
| Lrp | 226-237 | 6.183 |
| FadR | 344-360 | 6.152 |
| TrpR | 116-133 | 5.984 |
| UxuR | 325-342 | 5.555 |
| TorR | 49-58 | 5.209 |
| Ada | 211-238 | 5.068 |