| TF name | Position | PWM scan score |
| Fur | 226-240 | 12.358 |
| IHF | 110-122 | 12.160 |
| ArcA | 277-337 | 11.495 |
| Rob | 101-121 | 11.495 |
| CpxR | 43-57 | 11.097 |
| TorR | 363-372 | 10.913 |
| GadE | 370-389 | 10.797 |
| AgaR | 208-231 | 10.294 |
| Nac | 349-363 | 10.007 |
| NarP | 168-174 | 9.938 |
| XylR | 360-377 | 9.789 |
| ArgP | 314-326 | 9.352 |
| ArgR | 280-295 | 9.300 |
| UxuR | 5-22 | 9.244 |
| AraC | 330-347 | 9.150 |
| MarA | 192-212 | 9.144 |
| DeoR | 345-360 | 9.142 |
| CysB | 277-318 | 8.858 |
| H-NS | 383-397 | 8.756 |
| FNR | 277-298 | 8.741 |
| PhoB | 181-200 | 8.405 |
| UlaR | 75-94 | 8.361 |
| Fis | 226-246 | 8.256 |
| CytR | 16-55 | 8.112 |
| Lrp | 17-28 | 8.067 |
| DnaA | 362-370 | 8.058 |
| NagC | 282-304 | 7.446 |
| GcvA | 335-363 | 7.365 |
| NarL | 228-234 | 7.336 |
| GntR | 295-314 | 7.254 |
| ModE | 267-293 | 7.041 |
| IdnR | 19-34 | 6.953 |
| CRP | 191-212 | 6.505 |
| RcsB | 37-50 | 6.470 |
| OmpR | 380-399 | 6.381 |
| PhoP | 108-124 | 6.351 |
| MetR | 3-26 | 6.261 |
| RhaS | 364-380 | 6.214 |
| MalT | 236-245 | 6.179 |
| Mlc | 281-303 | 6.075 |
| LexA | 343-362 | 5.714 |
| PspF | 357-373 | 5.573 |
| MetJ | 326-333 | 5.548 |
| Ada | 66-93 | 5.043 |