| TF name | Position | PWM scan score |
| GntR | 297-316 | 15.938 |
| NagC | 359-381 | 14.598 |
| Fur | 95-109 | 14.313 |
| AraC | 210-227 | 12.510 |
| AgaR | 93-116 | 12.190 |
| OmpR | 317-336 | 12.177 |
| H-NS | 315-329 | 11.936 |
| ArgP | 247-259 | 11.636 |
| ArgR | 282-297 | 11.446 |
| TyrR | 5-26 | 10.964 |
| Nac | 241-255 | 10.848 |
| FNR | 239-260 | 10.741 |
| SoxS | 323-340 | 10.568 |
| MarA | 321-341 | 10.549 |
| GcvA | 290-318 | 10.521 |
| DeoR | 175-190 | 9.959 |
| Rob | 287-307 | 9.771 |
| IHF | 328-340 | 9.590 |
| LexA | 257-276 | 9.547 |
| ArcA | 278-338 | 9.253 |
| Fis | 369-389 | 9.172 |
| DnaA | 7-15 | 8.868 |
| OxyR | 283-327 | 8.686 |
| RcsB | 102-115 | 8.279 |
| PspF | 213-229 | 8.246 |
| GadE | 360-379 | 8.120 |
| PhoP | 326-342 | 8.080 |
| PhoB | 367-386 | 8.068 |
| Lrp | 376-387 | 8.021 |
| CysB | 213-254 | 8.021 |
| NarP | 342-348 | 7.860 |
| MalT | 132-141 | 7.829 |
| NarL | 307-313 | 7.041 |
| TorR | 70-79 | 6.994 |
| XylR | 215-232 | 6.822 |
| Mlc | 358-380 | 6.724 |
| MetR | 93-116 | 6.460 |
| MelR | 31-48 | 6.329 |
| CRP | 171-192 | 6.122 |
| IdnR | 268-283 | 6.101 |
| UlaR | 219-238 | 5.999 |
| CpxR | 7-21 | 5.957 |
| NorR | 331-347 | 5.482 |
| ModE | 193-219 | 5.137 |
| RhaS | 144-160 | 5.113 |