| TF name | Position | PWM scan score |
| ArcA | 242-302 | 17.176 |
| H-NS | 240-254 | 14.926 |
| NagC | 227-249 | 12.417 |
| Mlc | 217-239 | 12.255 |
| CytR | 238-277 | 11.881 |
| Nac | 58-72 | 11.246 |
| IHF | 264-276 | 10.630 |
| SoxS | 270-287 | 10.433 |
| CysB | 216-257 | 10.290 |
| OmpR | 227-246 | 9.399 |
| PhoP | 262-278 | 9.013 |
| NarL | 198-204 | 8.755 |
| PhoB | 351-370 | 8.618 |
| Fis | 265-285 | 8.536 |
| CRP | 5-26 | 8.508 |
| Lrp | 227-238 | 8.426 |
| ArgR | 246-261 | 8.422 |
| GcvA | 269-297 | 8.375 |
| RcsB | 216-229 | 8.188 |
| NarP | 143-149 | 7.885 |
| IdnR | 343-358 | 7.565 |
| FNR | 227-248 | 7.535 |
| ArgP | 263-275 | 7.447 |
| TorR | 226-235 | 7.050 |
| UlaR | 113-132 | 6.463 |
| AraC | 93-110 | 6.300 |
| NorR | 235-251 | 6.094 |
| GlpR | 232-251 | 5.926 |
| MalT | 382-391 | 5.758 |
| RhaS | 27-43 | 5.596 |
| LacI | 169-189 | 5.569 |
| DeoR | 230-245 | 5.439 |
| GadE | 237-256 | 5.417 |
| AgaR | 216-239 | 5.175 |
| MarA | 268-288 | 5.140 |