| TF name | Position | PWM scan score |
| OmpR | 223-242 | 13.165 |
| IdnR | 161-176 | 10.601 |
| LexA | 206-225 | 10.390 |
| AgaR | 218-241 | 10.185 |
| CueR | 45-63 | 9.779 |
| Nac | 235-249 | 8.841 |
| PhoP | 230-246 | 8.728 |
| MarA | 356-376 | 8.681 |
| IHF | 103-115 | 8.248 |
| Rob | 288-308 | 8.015 |
| H-NS | 51-65 | 7.945 |
| GlpR | 355-374 | 7.582 |
| Lrp | 153-164 | 7.451 |
| TorR | 261-270 | 7.293 |
| SoxS | 38-55 | 7.233 |
| MetR | 363-386 | 7.149 |
| CRP | 355-376 | 7.104 |
| LacI | 91-111 | 6.509 |
| ArgR | 364-379 | 6.486 |
| FNR | 154-175 | 6.441 |
| RhaS | 82-98 | 6.344 |
| NorR | 78-94 | 6.255 |
| NarL | 176-182 | 5.823 |
| Fis | 226-246 | 5.743 |
| PhoB | 2-21 | 5.708 |
| CysB | 198-239 | 5.544 |
| FhlA | 316-355 | 5.511 |
| MetJ | 223-230 | 5.403 |
| MelR | 103-120 | 5.265 |