| TF name | Position | PWM scan score |
| NagC | 196-218 | 11.334 |
| IdnR | 93-108 | 10.779 |
| FruR | 353-370 | 10.161 |
| ArgR | 206-221 | 9.721 |
| FadR | 96-112 | 9.638 |
| CpxR | 121-135 | 9.462 |
| PhoP | 362-378 | 9.371 |
| AgaR | 119-142 | 8.650 |
| ArcA | 76-136 | 8.572 |
| MalT | 320-329 | 8.477 |
| FNR | 154-175 | 8.420 |
| IHF | 335-347 | 8.252 |
| TyrR | 80-101 | 8.080 |
| H-NS | 212-226 | 7.859 |
| Fis | 108-128 | 7.301 |
| Lrp | 329-340 | 7.292 |
| AraC | 122-139 | 7.186 |
| GadE | 88-107 | 7.172 |
| PhoB | 88-107 | 7.158 |
| OmpR | 150-169 | 7.044 |
| Nac | 331-345 | 6.962 |
| FhlA | 301-340 | 6.894 |
| LexA | 82-101 | 6.856 |
| NorR | 362-378 | 6.732 |
| NarP | 182-188 | 6.703 |
| NarL | 220-226 | 6.678 |
| SoxS | 328-345 | 6.602 |
| GlpR | 195-214 | 6.588 |
| CRP | 73-94 | 6.572 |
| Fur | 74-88 | 6.525 |
| RcsB | 98-111 | 6.184 |
| OxyR | 207-251 | 6.173 |
| UxuR | 31-48 | 6.084 |
| LacI | 74-94 | 6.013 |
| GcvA | 215-243 | 5.766 |
| DeoR | 323-338 | 5.755 |
| Rob | 173-193 | 5.731 |
| ArgP | 299-311 | 5.599 |
| CytR | 188-227 | 5.329 |
| MarA | 190-210 | 5.258 |
| GalS | 344-359 | 5.048 |
| GalR | 344-359 | 5.048 |
| TorR | 360-369 | 5.010 |