| TF name | Position | PWM scan score |
| ArcA | 321-381 | 14.579 |
| PhoP | 326-342 | 12.897 |
| FNR | 218-239 | 12.877 |
| UxuR | 232-249 | 11.602 |
| UlaR | 230-249 | 11.350 |
| H-NS | 345-359 | 10.360 |
| XylR | 339-356 | 10.192 |
| IHF | 350-362 | 10.055 |
| AgaR | 372-395 | 10.037 |
| Ada | 362-389 | 9.624 |
| MarA | 146-166 | 9.537 |
| TorR | 220-229 | 9.372 |
| ModE | 119-145 | 9.352 |
| Fur | 349-363 | 9.211 |
| Rob | 319-339 | 8.989 |
| PhoB | 99-118 | 8.930 |
| CytR | 298-337 | 8.703 |
| OmpR | 343-362 | 8.500 |
| ArgP | 197-209 | 8.416 |
| GlpR | 184-203 | 8.243 |
| CpxR | 237-251 | 8.234 |
| AraC | 103-120 | 8.153 |
| Nac | 174-188 | 7.793 |
| IdnR | 224-239 | 7.652 |
| CRP | 85-106 | 7.586 |
| MalT | 63-72 | 7.561 |
| NarL | 273-279 | 7.309 |
| Mlc | 347-369 | 6.955 |
| TrpR | 312-329 | 6.852 |
| GadE | 320-339 | 6.726 |
| Fis | 175-195 | 6.696 |
| Lrp | 249-260 | 6.696 |
| NarP | 238-244 | 6.562 |
| ArgR | 178-193 | 6.383 |
| MetJ | 337-344 | 6.332 |
| SoxS | 333-350 | 6.238 |
| RcsB | 343-356 | 6.170 |
| MelR | 189-206 | 6.000 |
| DeoR | 139-154 | 5.960 |
| GcvA | 339-367 | 5.939 |
| FadR | 338-354 | 5.721 |