| TF name | Position | PWM scan score |
| RcsB | 338-351 | 9.564 |
| PhoB | 217-236 | 9.509 |
| ArgP | 342-354 | 8.866 |
| DnaA | 232-240 | 8.639 |
| Fis | 329-349 | 8.558 |
| DeoR | 377-392 | 8.345 |
| MarA | 312-332 | 8.239 |
| GlpR | 90-109 | 8.108 |
| OmpR | 80-99 | 7.805 |
| IHF | 12-24 | 7.717 |
| MetJ | 261-268 | 7.644 |
| TyrR | 56-77 | 7.524 |
| NarP | 278-284 | 7.426 |
| RhaS | 278-294 | 7.324 |
| Rob | 76-96 | 7.022 |
| H-NS | 91-105 | 6.800 |
| XylR | 87-104 | 6.629 |
| MalT | 371-380 | 6.623 |
| CpxR | 232-246 | 5.924 |
| TorR | 150-159 | 5.844 |
| NarL | 83-89 | 5.823 |
| SoxS | 314-331 | 5.668 |
| PspF | 328-344 | 5.486 |
| NorR | 220-236 | 5.312 |