| TF name | Position | PWM scan score |
| ArcA | 99-159 | 11.735 |
| MetR | 193-216 | 10.907 |
| CysB | 321-362 | 10.700 |
| OmpR | 127-146 | 10.456 |
| NtrC | 147-163 | 10.173 |
| PhoB | 92-111 | 9.763 |
| NagC | 348-370 | 9.730 |
| CRP | 123-144 | 9.566 |
| FhlA | 297-336 | 9.507 |
| PhoP | 319-335 | 9.144 |
| RcsB | 203-216 | 9.112 |
| Rob | 312-332 | 8.752 |
| XylR | 133-150 | 8.560 |
| FNR | 126-147 | 8.462 |
| GcvA | 199-227 | 8.391 |
| ArgP | 328-340 | 8.362 |
| H-NS | 138-152 | 8.248 |
| OxyR | 96-140 | 8.208 |
| Fur | 131-145 | 8.060 |
| Nac | 171-185 | 7.984 |
| DnaA | 155-163 | 7.930 |
| ModE | 312-338 | 7.878 |
| MelR | 203-220 | 7.854 |
| CueR | 274-292 | 7.703 |
| AraC | 183-200 | 7.452 |
| IHF | 27-39 | 7.301 |
| NarL | 193-199 | 7.080 |
| MetJ | 183-190 | 7.056 |
| UlaR | 4-23 | 6.943 |
| ArgR | 201-216 | 6.767 |
| Fis | 95-115 | 6.696 |
| GadE | 192-211 | 6.561 |
| TorR | 118-127 | 6.358 |
| Lrp | 129-140 | 6.044 |
| MarA | 93-113 | 5.935 |
| PspF | 191-207 | 5.797 |
| IdnR | 355-370 | 5.647 |
| Ada | 245-272 | 5.211 |
| GlpR | 82-101 | 5.106 |