| TF name | Position | PWM scan score |
| CysB | 345-386 | 13.895 |
| ArcA | 215-275 | 12.834 |
| GcvA | 275-303 | 12.296 |
| AgaR | 228-251 | 11.536 |
| DnaA | 38-46 | 9.488 |
| H-NS | 376-390 | 9.280 |
| CytR | 350-389 | 9.262 |
| SoxS | 141-158 | 9.127 |
| OmpR | 276-295 | 9.047 |
| PhoB | 368-387 | 9.035 |
| Fur | 342-356 | 8.957 |
| GadE | 35-54 | 8.823 |
| IHF | 377-389 | 8.737 |
| FNR | 231-252 | 8.626 |
| NagC | 239-261 | 8.471 |
| Lrp | 278-289 | 8.352 |
| ArgR | 211-226 | 8.304 |
| Fis | 369-389 | 7.929 |
| MetR | 304-327 | 7.774 |
| Nac | 4-18 | 7.584 |
| NarL | 324-330 | 7.309 |
| Mlc | 238-260 | 7.305 |
| PspF | 336-352 | 7.190 |
| AraC | 219-236 | 7.188 |
| ArgP | 35-47 | 7.037 |
| UxuR | 337-354 | 7.019 |
| CRP | 281-302 | 6.878 |
| MarA | 273-293 | 6.858 |
| NarP | 306-312 | 6.703 |
| RcsB | 165-178 | 6.671 |
| Rob | 369-389 | 6.578 |
| NorR | 379-395 | 6.504 |
| UlaR | 322-341 | 6.363 |
| PhoP | 367-383 | 6.250 |
| MalT | 135-144 | 6.233 |
| XylR | 341-358 | 6.189 |
| NtrC | 192-208 | 6.170 |
| LacI | 34-54 | 5.922 |
| MetJ | 359-366 | 5.328 |
| DeoR | 234-249 | 5.185 |