| TF name | Position | PWM scan score |
| AgaR | 275-298 | 14.642 |
| DeoR | 122-137 | 13.682 |
| ArcA | 35-95 | 13.365 |
| Rob | 338-358 | 11.112 |
| Nac | 254-268 | 11.009 |
| CytR | 32-71 | 10.442 |
| FNR | 35-56 | 10.372 |
| ArgP | 304-316 | 10.338 |
| H-NS | 117-131 | 10.232 |
| IHF | 305-317 | 10.105 |
| MetJ | 8-15 | 10.100 |
| CRP | 311-332 | 9.884 |
| PhoB | 117-136 | 9.071 |
| GadE | 123-142 | 8.412 |
| Fis | 109-129 | 8.387 |
| UxuR | 208-225 | 8.355 |
| Lrp | 44-55 | 8.349 |
| TyrR | 29-50 | 8.235 |
| OmpR | 31-50 | 7.962 |
| TorR | 87-96 | 7.916 |
| CysB | 35-76 | 7.880 |
| RcsB | 262-275 | 7.798 |
| XylR | 260-277 | 7.777 |
| NagC | 77-99 | 7.482 |
| SoxS | 232-249 | 7.455 |
| NtrC | 167-183 | 7.342 |
| UlaR | 280-299 | 7.293 |
| Fur | 30-44 | 7.286 |
| ArgR | 327-342 | 7.283 |
| PspF | 7-23 | 7.091 |
| FadR | 9-25 | 7.003 |
| IdnR | 109-124 | 6.941 |
| CpxR | 306-320 | 6.624 |
| MetR | 107-130 | 6.622 |
| LexA | 355-374 | 6.604 |
| LacI | 293-313 | 6.583 |
| NarL | 336-342 | 6.467 |
| MarA | 117-137 | 6.108 |
| TrpR | 1-18 | 6.102 |
| GlpR | 334-353 | 5.974 |
| MelR | 378-395 | 5.902 |
| DcuR | 28-82 | 5.756 |
| PhoP | 41-57 | 5.728 |
| GalR | 31-46 | 5.688 |
| GalS | 31-46 | 5.688 |
| NarP | 284-290 | 5.593 |
| AraC | 112-129 | 5.540 |
| DnaA | 236-244 | 5.046 |
| PurR | 176-191 | 5.026 |