| TF name | Position | PWM scan score |
| CysB | 356-397 | 20.145 |
| DeoR | 295-310 | 18.285 |
| XylR | 378-395 | 14.231 |
| PhoB | 361-380 | 13.557 |
| PspF | 112-128 | 12.762 |
| ArcA | 94-154 | 12.161 |
| ModE | 78-104 | 11.636 |
| Rob | 230-250 | 11.331 |
| Nac | 287-301 | 11.037 |
| MarA | 194-214 | 10.773 |
| ArgR | 102-117 | 10.386 |
| ArgP | 161-173 | 9.725 |
| SoxS | 346-363 | 9.347 |
| NtrC | 261-277 | 9.303 |
| UlaR | 139-158 | 9.122 |
| AgaR | 76-99 | 9.088 |
| OmpR | 145-164 | 9.060 |
| Fur | 19-33 | 8.969 |
| FNR | 153-174 | 8.843 |
| H-NS | 306-320 | 8.624 |
| RcsB | 174-187 | 8.451 |
| PurR | 239-254 | 8.354 |
| GalR | 384-399 | 8.250 |
| GalS | 384-399 | 8.250 |
| IHF | 162-174 | 8.127 |
| Lrp | 373-384 | 7.967 |
| Fis | 301-321 | 7.910 |
| UxuR | 30-47 | 7.838 |
| CytR | 94-133 | 7.750 |
| NorR | 24-40 | 7.707 |
| GadE | 120-139 | 7.647 |
| AraC | 47-64 | 7.583 |
| IdnR | 185-200 | 7.565 |
| CRP | 124-145 | 7.173 |
| GntR | 81-100 | 7.167 |
| NagC | 118-140 | 7.123 |
| NarL | 375-381 | 7.080 |
| LexA | 60-79 | 7.037 |
| CpxR | 188-202 | 6.992 |
| GlpR | 192-211 | 6.013 |
| Mlc | 88-110 | 5.988 |
| MetJ | 139-146 | 5.973 |
| DnaA | 335-343 | 5.910 |
| Ada | 38-65 | 5.733 |
| LacI | 41-61 | 5.702 |
| TorR | 282-291 | 5.646 |
| PhoP | 356-372 | 5.494 |
| MelR | 299-316 | 5.107 |