| TF name | Position | PWM scan score |
| ArcA | 118-178 | 15.611 |
| CysB | 320-361 | 13.970 |
| AgaR | 372-395 | 12.709 |
| OmpR | 371-390 | 12.202 |
| PhoP | 375-391 | 12.146 |
| PhoB | 57-76 | 11.473 |
| TorR | 19-28 | 11.356 |
| AraC | 266-283 | 11.125 |
| RcsB | 129-142 | 11.122 |
| Fur | 266-280 | 10.921 |
| PspF | 202-218 | 9.635 |
| CpxR | 62-76 | 9.587 |
| FNR | 370-391 | 9.468 |
| Mlc | 337-359 | 9.395 |
| IHF | 328-340 | 9.363 |
| Fis | 142-162 | 9.202 |
| GadE | 143-162 | 9.142 |
| H-NS | 368-382 | 9.085 |
| UxuR | 266-283 | 8.769 |
| DeoR | 167-182 | 8.725 |
| Nac | 74-88 | 8.643 |
| MetR | 321-344 | 8.567 |
| Lrp | 371-382 | 8.398 |
| ArgP | 144-156 | 8.362 |
| NarL | 147-153 | 8.326 |
| GlpR | 207-226 | 8.029 |
| GntR | 20-39 | 7.984 |
| MetJ | 281-288 | 7.980 |
| XylR | 53-70 | 7.706 |
| RhaS | 17-33 | 7.586 |
| DnaA | 318-326 | 7.502 |
| CytR | 192-231 | 7.319 |
| NarP | 329-335 | 7.302 |
| NagC | 214-236 | 7.278 |
| MelR | 113-130 | 7.270 |
| DcuR | 313-367 | 7.197 |
| CRP | 345-366 | 7.164 |
| UlaR | 170-189 | 6.952 |
| GcvA | 263-291 | 6.856 |
| NorR | 333-349 | 6.732 |
| GalR | 369-384 | 6.334 |
| GalS | 369-384 | 6.334 |
| MarA | 34-54 | 6.314 |
| OxyR | 38-82 | 6.136 |
| ArgR | 295-310 | 6.003 |
| SoxS | 348-365 | 5.933 |
| Ada | 329-356 | 5.333 |
| MalT | 134-143 | 5.266 |
| TyrR | 259-280 | 5.065 |