| TF name | Position | PWM scan score |
| Nac | 276-290 | 12.717 |
| Fur | 103-117 | 12.182 |
| ArgP | 182-194 | 12.109 |
| FNR | 284-305 | 11.864 |
| AraC | 221-238 | 11.637 |
| IHF | 376-388 | 11.054 |
| ArcA | 322-382 | 11.012 |
| CytR | 360-399 | 10.658 |
| UlaR | 325-344 | 10.507 |
| ArgR | 91-106 | 9.691 |
| TorR | 283-292 | 9.167 |
| XylR | 88-105 | 9.024 |
| MetR | 263-286 | 8.831 |
| NorR | 370-386 | 8.617 |
| GlpR | 71-90 | 8.476 |
| Lrp | 111-122 | 8.463 |
| RcsB | 272-285 | 8.456 |
| DeoR | 377-392 | 8.409 |
| PhoB | 246-265 | 8.381 |
| IdnR | 232-247 | 8.251 |
| Ada | 76-103 | 7.963 |
| CpxR | 377-391 | 7.941 |
| CysB | 227-268 | 7.680 |
| Mlc | 373-395 | 7.403 |
| SoxS | 350-367 | 7.314 |
| DnaA | 97-105 | 7.287 |
| OxyR | 254-298 | 7.154 |
| H-NS | 289-303 | 6.967 |
| PhoP | 285-301 | 6.933 |
| PurR | 357-372 | 6.434 |
| Fis | 176-196 | 6.255 |
| MelR | 211-228 | 6.057 |
| ModE | 245-271 | 6.006 |
| MarA | 134-154 | 5.962 |
| NarL | 108-114 | 5.823 |
| CRP | 305-326 | 5.739 |
| OmpR | 286-305 | 5.732 |
| TyrR | 224-245 | 5.661 |
| GadE | 171-190 | 5.595 |
| AgaR | 213-236 | 5.579 |
| UxuR | 183-200 | 5.563 |
| NarP | 303-309 | 5.482 |
| NagC | 92-114 | 5.464 |
| LexA | 357-376 | 5.306 |
| DcuR | 207-261 | 5.218 |